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The oral microbiome : methods and protocols

The oral microbiome : methods and protocols

Material type
단행본
Personal Author
Adami, Guy R.
Title Statement
The oral microbiome : methods and protocols / edited by Guy R. Adami.
Publication, Distribution, etc
New York :   Humana Press,   c2021.  
Physical Medium
xiii, 295 p. : ill. (chiefly col.) ; 24 cm.
Series Statement
Methods in molecular biology,1064-3745 ; volume 2327
ISBN
9781071615171
Content Notes
Increasing Reproducibility in Oral Microbiome Research -- Oral Sampling Techniques -- Functional Metagenomic Screening for Antimicrobial Resistance in the Oral Microbiome -- Isolation and Functional Characterization of Fusobacterium nucleatum Bacteriophage -- Comparison of Microbiome in Stimulated Saliva in Edentulous and Dentate Subjects -- Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics -- A Standardized Approach for Shotgun Metagenomic Analysis of Ancient Dental Calculus -- Whole-Genome Sequencing of Pathogens in Saliva: A Target-Enrichment Approach for SARS-CoV-2 -- Assessing the Relationship Between Nitrate-Reducing Capacity of the Oral Microbiome and Systemic Outcomes -- Identification of Oral Bacterial Biosynthetic Gene Clusters Associated with Caries -- Usage of Metatranscriptomics to Understand Oral Disease -- Noninvasive Acquisition of Oral Mucosal Epithelial miRNA and Bacteria DNA/RNA from a Single Site -- Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry -- Strain Level Profiling of Oral Microbiota with Targeted Sequencing -- Profiling the Human Oral Mycobiome in Tissue and Saliva Using ITS2 DNA Metabarcoding Compared to a Fungal Specific Database -- Measuring Effects of Dietary Fiber on the Murine Oral Microbiome with Enrichment of 16S rDNA Prior to Amplicon Synthesis -- Antibiotic Conditioning and Single Gavage Allows Stable Engraftment of Human Microbiota in Mice.
Bibliography, Etc. Note
Includes bibliographical references and index.
Subject Added Entry-Topical Term
Mouth --Microbiology. Mouth --Diseases. Mouth --Care and hygiene.
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008 211019s2021 nyua b 001 0 eng d
020 ▼a 9781071615171
040 ▼a 211009 ▼c 211009 ▼d 211009
082 0 4 ▼a 616.3101 ▼2 23
084 ▼a 616.3101 ▼2 DDCK
090 ▼a 616.3101 ▼b O63
245 0 4 ▼a The oral microbiome : ▼b methods and protocols / ▼c edited by Guy R. Adami.
260 ▼a New York : ▼b Humana Press, ▼c c2021.
300 ▼a xiii, 295 p. : ▼b ill. (chiefly col.) ; ▼c 24 cm.
490 1 ▼a Methods in molecular biology, ▼x 1064-3745 ; ▼v volume 2327
490 1 ▼a Springer protocols
504 ▼a Includes bibliographical references and index.
505 0 ▼a Increasing Reproducibility in Oral Microbiome Research -- Oral Sampling Techniques -- Functional Metagenomic Screening for Antimicrobial Resistance in the Oral Microbiome -- Isolation and Functional Characterization of Fusobacterium nucleatum Bacteriophage -- Comparison of Microbiome in Stimulated Saliva in Edentulous and Dentate Subjects -- Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics -- A Standardized Approach for Shotgun Metagenomic Analysis of Ancient Dental Calculus -- Whole-Genome Sequencing of Pathogens in Saliva: A Target-Enrichment Approach for SARS-CoV-2 -- Assessing the Relationship Between Nitrate-Reducing Capacity of the Oral Microbiome and Systemic Outcomes -- Identification of Oral Bacterial Biosynthetic Gene Clusters Associated with Caries -- Usage of Metatranscriptomics to Understand Oral Disease -- Noninvasive Acquisition of Oral Mucosal Epithelial miRNA and Bacteria DNA/RNA from a Single Site -- Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry -- Strain Level Profiling of Oral Microbiota with Targeted Sequencing -- Profiling the Human Oral Mycobiome in Tissue and Saliva Using ITS2 DNA Metabarcoding Compared to a Fungal Specific Database -- Measuring Effects of Dietary Fiber on the Murine Oral Microbiome with Enrichment of 16S rDNA Prior to Amplicon Synthesis -- Antibiotic Conditioning and Single Gavage Allows Stable Engraftment of Human Microbiota in Mice.
650 0 ▼a Mouth ▼x Microbiology.
650 0 ▼a Mouth ▼x Diseases.
650 0 ▼a Mouth ▼x Care and hygiene.
700 1 ▼a Adami, Guy R.
830 0 ▼a Methods in molecular biology ; ▼v v. 2327.
830 0 ▼a Springer protocols.
945 ▼a KLPA

Holdings Information

No. Location Call Number Accession No. Availability Due Date Make a Reservation Service
No. 1 Location Science & Engineering Library/Sci-Info(Stacks2)/ Call Number 616.3101 O63 Accession No. 521006143 Availability Available Due Date Make a Reservation Service B M

Contents information

Table of Contents

Preface..
Table of Contents...
Contributing Authors...

1. Increasing Reproducibility in Oral Microbiome Research
Divya Gopinath and Rohit Kunnath Menon

2. Oral Sampling Techniques
Heba Hussein

3. Functional Metagenomic Screening for Antimicrobial Resistance in the Oral Microbiome
Supathep Tansirichaiya, Liam J. Reynolds, and Adam P. Roberts

4. Isolation and Functional Characterization of Fusobacterium nucleatum Bacteriophage
Mwila Kabwe, Teagan Brown, Heng Ku, Stuart Dashper, and Joseph Tucci

5. Comparison of Microbiome in Stimulated Saliva in Edentulous and Dentate Subjects
Guy R. Adami, Michael J. Ang, and Elissa M. Kim

6. Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics
Clarisse Marotz, Cristal Zuniga, Livia Zaramela, Rob Knight, and Karsten Zengler

7. A Standardized Approach for Shotgun Metagenomic Analysis of Ancient Dental Calculus
Nicole E. Moore and Laura S. Weyrich

8. Whole-Genome Sequencing of Pathogens in Saliva: A Target-Enrichment Approach for SARS-CoV-2
David J. Speicher, Jalees A. Nasir, Peng Zhou, and Danielle E. Anderson

9. Assessing the Relationship Between Nitrate-Reducing Capacity of the Oral Microbiome and Systemic Outcomes
Charlene E. Goh, Bruno Bohn, and Ryan T. Demmer

10. Identification of Oral Bacterial Biosynthetic Gene Clusters Associated with Caries
Jonathon L. Baker and Anna Edlund

11. Usage of Metatranscriptomics to Understand Oral Disease
Takayasu Watanabe

12. Noninvasive Acquisition of Oral Mucosal Epithelial miRNA and Bacteria DNA/RNA from a Single Site
Guy R. Adami

13. Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry
Alexander Rabe, Manuela Gesell Salazar, and Uwe Voelker

14. Strain Level Profiling of Oral Microbiota with Targeted Sequencing
Chiranjit Mukherjee and Eugene J. Leys

15. Profiling the Human Oral Mycobiome in Tissue and Saliva Using ITS2 DNA Metabarcoding Compared to a Fungal Specific Database
David J. Speicher and Ramy K. Aziz

16. Measuring Effects of Dietary Fiber on the Murine Oral Microbiome with Enrichment of 16S rDNA Prior to Amplicon Synthesis
Lea M. Sedghi, Stefan J. Green, and Craig D. Byron

17. Antibiotic Conditioning and Single Gavage Allows Stable Engraftment of Human Microbiota in Mice
Zhigang Zhu, Thomas Kaiser, and Christopher Staley

Subject Index List...

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