Preface: Designing a Circadian Experiment
Table of Contents...
Contributing Authors...
Part I Measuring and Modeling Physiological and Behavioral Rhythms
1. Real-Time In Vitro Fluorescence Anisotropy of the Cyanobacterial Circadian Clock
Joel Heisler, Archana Chavan, Yong-Gang Chang, and Andy LiWang
2. Inductively Coupled Plasma Mass Spectrometry for Elemental Analysis in Circadian Biology
Alessandra Stangherlin, Jason Day, and John O''Neill
3. The Assessment of Circadian Rhythms within the Immune System
Chloe C. Nobis, Marc Cuesta, Jean-Francois Daudelin, Genevieve Dubeau-Laramee, Diane B. Boivin, Nathalie Labrecque, and Nicolas Cermakian
4. Measuring Circadian Rhythms in Human Cells
Ngoc-Hien Du and Steven A. Brown
5. Measuring the Effects of Circadian Rhythm-Related Manipulations on Depression-Like Behavior in Rodents: Forced Swim and Tail Suspension Tests
Chelsea A. Vadnie, Lauren M. DePoy, and Colleen A. McClung
6. Asking the Clock: How to Use Information from Questionnaires for Circadian Phenotyping
Celine Vetter, Eva C. Winnebeck, and Till Roenneberg
7. Simple Kinetic Models in Molecular Chronobiology
J. Patrick Pett, Pal O. Westermark, and Hanspeter Herzel
Part II Genome-Wide Analyses in Circadian Biology
8. Searching Novel Clock Genes using RNAi-Based Screening
Bert Maier, Stephan Lorenzen, Anna-Marie Finger, Hanspeter Herzel, and Achim Kramer
9. Chromatin Immunoprecipitation (ChIP) from Mouse Liver Nuclei
Sara S. Fonseca Costa and Jurgen A. Ripperger
10. Using GRO-seq to Measure Circadian Transcription and Discover Circadian Enhancers
Bin Fang, Dongyin Guan, and Mitchell A. Lazar
11. Circadian Metabolomics from Breath
Steven A. Brown and Pablo M-L Sinues
12. A Lipidomics View of Circadian Biology
Rona Aviram, Chunyan Wang, Xianlin Han, and Gad Asher
13. Circadian Lipidomics: Analysis of Lipid Metabolites Around-The-Clock
Ursula Loizides-Mangold, Volodymyr Petrenko, and Charna Dibner
14. Phosphoproteome and Proteome Sample Preparation from Mouse Tissues for Circadian Analysis
Franziska Bruning, Sean J. Humphrey and Maria S. Robles
15. Circadian Phosphorylation of CLOCK and BMAL1
Hikari Yoshitane and Yoshitaka Fukada
Part III Imaging and Manipulating Brain Clocks
16. Fluorescence Live Imaging of Drosophila Circadian Pacemaker Neurons
Virginie Sabado and Emi Nagoshi
17. Monitoring Electrical Activity in Drosophila Circadian Output Neurons
Annika F. Barber and Amita Sehgal
18. Light Input to the Mammalian Circadian Clock
Adam A. Dannerfjord, Laurence A. Brown, Russell G. Foster, and Stuart N. Peirson
19. Acute In Vivo Multi-Electrode Recordings from the Mouse Suprachiasmatic Nucleus
Joshua Mouland, Lauren Walmsley, Timothy M. Brown, and Robert J. Lucas
20. Perforated Multi-Electrode Array Recording in Hypothalamic Brain Slices
Mino D. C. Belle, Beatriz Bano-Otalora and Hugh D. Piggins
21. Collection of Mouse Brain Slices for Bioluminescence Imaging of Circadian Clock Networks
Jennifer A. Evans, David K. Welsh, and Alec J. Davidson
22. Computational Analysis of PER2::LUC Imaging Data
Tanya L. Leise
23. Electrophysiological Approaches to Studying the Suprachiasmatic Nucleus
Stephan Michel, Takahiro J. Nakamura, Johanna H. Meijer, and Christopher S. Colwell
24. Optogenetic Methods for the Study of Circadian Rhythms
Jeff R. Jones, Michael C. Tackenberg, and Douglas G. McMahon
